Science Web Apps

Page last modified 05:04, 16 Aug 2009 by mndoci | Page History
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I am trying to catalog all known scientific web services.  At least all the life science ones.  Obviously, I am not going to be able to track down everything, so if you can add anything, please do so.  Also let me know if I should ignore sites that are just destination sites, and do not provide an API.

Point Resources

  • Exon Miner: Web service for Gene Chip exon array data analysis.  No API
  • CARMAweb: Comprehensive microarray analysis.  SOAP API currently disabled
  • SysPIMP: Platform for identifying mutated proteins from mass spec data (X! Tandem).  No API
  • Comparative Toxicogenomics Database: Elucidates molecular mechanisms by which environmental chemicals affect human disease. No API as far as I can tell
  • Sprouts: Visualization and analysis of the impact of point mutations based on protein structure analysis
  • GeneDistiller: Distilling candidate genes from linkage interval.  Has an API although not quite formalisted yet
  • Stralivari Database of structural alignments of proteins with altnerative structures. Alternative structures are taken from the PDB as well as from snapshots from Molecular Dynamics simulations.  No API
  • MEMOFinderNo API
  • RobettaRobetta is a full-chain protein structure prediction server. It parses protein chains into putative domains with the Ginzu protocol, and models those domains either by homology modeling or by ab initio modeling.

General Resources

  • Ensembl: Multiple endpoints (e.g. BioMart).  Has an API
  • NCBI: Multiple endpoints.  Has an API
  • EBI: Multiple endpoints.  Lots of APIs

 

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