Life Science Apps on AWS

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Application Type (AMI or EMR) Link AMI ID Notes
RunBlast Paid AMI     From Michael Cariaso
Cloudburst-bio EMR     From Michael Schatz
Nubic-EC2 AMI     From Simon Lin's group
 BIoinformatics Image AMI  http://bit.ly/e1iRF  ami-5703e63e  From JCVI.  Contains Blastall and HMMer
VIPDAC AMI http://github.com/mcwbbc/vipdac/ ami-52f5123b From Simon Twigger et al at MCW
Bioperl-max AMI http://fortinbras.us/bioperl-max/

ami-1ad03273

From Fortinbras
Cloud Bio-Linux AMI http://www.jcvi.org/cms/research/pro...inux/overview/ ami-6953b200 From JCVI.  Contains a variety of tools, including Celera Assembler, HMMer, EMBOSS, Jalview
Crossbow AMI http://bowtie-bio.sourceforge.net/cr...ow/index.shtml ami-6aa34003 & ami-f85fbf91 From Ben Langmead and Michael Schatz.  Combines Bowtie & SoapSNP
Galaxy AMI http://bitbucket.org/galaxy/galaxy-central/wiki/cloud ami-9724c7fe & ami-1430d27d One stop shop for sequence analysis from Anton Nekurotenko and others at Penn State
MachetEC2 AMI http://github.com/infochimps/machetec2 ami-29ef0840 From the infochimps.  Not a life science AMI per se but tons of data hacking tools and libraries

I also manage a list of parallel computing frameworks on EC2

If you would like to contribute to this page, please email me: firstname@firstnamelastname.net

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